#NEXUS begin trees; [Treefile saved Fri Aug 13 15:11:35 1999] [! >Data file = C:\WINNT\Profiles\jimmylin\Desktop\Tree\macro_properties\paup\without_Pfal\dint-freq-per.nex >Heuristic search settings: > Optimality criterion = distance (minimum evolution) > Negative branch lengths allowed, but set to zero for tree-score > calculation > Distance measure = User-input > Starting tree(s) obtained via neighbor-joining > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > Initial 'MaxTrees' setting = 100 > Zero-length branches not collapsed > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >NOTE: Random-addition-sequence option is ignored when starting trees are > obtained using neighbor-joining. > >Heuristic search completed > Total number of rearrangements tried = 3323 > Score of best tree(s) found = 0.53727 > Number of trees retained = 1 > Time used = 0.33 sec ] translate 1 Aaeo, 2 Aful, 3 Bbur, 4 Bsub, 5 Cele, 6 Cpne, 7 Ctra, 8 Ecol, 9 Hinf, 10 Hpyl, 11 Mgen, 12 Mjan, 13 Mpne, 14 Mthe, 15 Mtub, 16 Phor, 17 Rpro, 18 Scer, 19 Syne, 20 Tpal ; tree PAUP_1 = [&U] (1:0.021279,((((2:0.015930,((8:0.004559,20:0.018652):0.020365,(14:0.025154,15:0.115303):0.004404):0.005871):0.010917,19:0.020555):0.013639,4:0.010862):0.007606,(((((((((3:0.025360,17:0.016915):0.006944,12:0.009155):0.008419,11:0.015481):0.020064,5:0.013266):0.010582,9:0.011634):0.001045,10:0.014024):0.009347,18:0.008732):0.001947,13:0.016241):0.013483,(6:0.003585,7:0.003308):0.008974):0.005286):0.002384,16:0.016001); end;